Computational Developmental Biology

Morphogenesis

48. A Parallel Implementation of the Cellular Potts Model for Simulation of Cell-Based Morphogenesis

N. Chen, J. A. Glazier, J. A. Izaguirre, and M. S. Alber

Computer Physics Communications 176:670 (2007)

45. From Genes To Organisms Via The Cell: A Problem Solving Environment For Multicellular Development

T. Cickovski, K. Aras, M. Swat, R. M. H. Merks, T. Glimm, H. G. E.Hentschel, M. S. Alber, J. A. Glazier, S. A. Newman, J. A. Izaguirre

Accepted, Computing in Science and Engineering (2007)

42. A Framework for Three-Dimensional Simulation of Morphogenesis

T. Cickovski, C. Huang, R. Chaturvedi, T. Glimm, H.G.E. Hentschel, M. Alber, J. A. Glazier, S. A. Newman, and J. A. Izaguirre

IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 2, pp. 237-288, 2005

39. On Multiscale Approaches to Three-Dimensional Modeling of Morphogenesis

R. Chaturvedi, C. Huang, B. Kazmierczak, T. Schneider, J. A. Izaguirre, S. A. Newman, J. A. Glazier, and M. Alber

Journal of the Royal Society, Interface, Vol. 2, pp. 237-253, 2005

36. CompuCell, a multi-model framework for simulation of morphogenesis

Jesús A. Izaguirre, Rajiv Chaturvedi, Chengbang Huang, Trevor Cickovski, Joseph Coffland, Gilberto Thomas, Gabor Forgacs, Mark Alber, Stuart A. Newman, and James A. Glazier

Bioinformatics, Vol. 20, No. 7, pp. 1129-1137, 2004

13. A Hybrid Discrete-Continuum Model for 3-D Skeletogenesis of the Vertebrate Limb

R. Chaturvedi, C. Huang, J. A. Izaguirre, S. A. Newman, J. A. Glazier, and M. Alber

Peter M. A. Sloot, Bastien Chopard, and Alfons G. Hoekstra, editors

Cellular Automata: 6th International Conference on Cellular Automata for Research and Industry, ACRI 2004, Amsterdam, The Netherlands, October 25-28, 2004

Volume 3305 of Lecture Notes in Computer Science, pp. 543-552. Springer Verlag, Berlin Heidelberg, 2004

11. Multi-model simulations of chicken limb morphogenesis

Rajiv Chaturvedi, Jesús A. Izaguirre, Chengbang Huang, Trevor Cickovski, Patrick Virtue, Gilberto Thomas, Gabor Forgacs, Mark Alber, Stuart A. Newman, and James A. Glazier

>Springer Verlag LNCS 2659, Computational Science- ICCS 2003, International conference Melbourne, Australia and St. Petersburg, Russia, June 2003, Part III, pp 39-49